Christopher Marcotte's Projects
A set of functions for use in solving the complex Ginzburg-Landau equation.
Config files for my GitHub profile.
Repository for core tracking
Implementation of some basic ideas around continuous-time Echo State Networks (CTESN) in julia
Implementation of various ensemble Kalman Filter data assimilation methods in Julia
A flexible framework for solving PDEs with modern spectral methods.
Code for the investigation of quenching of stable pulses in FitzHugh-Nagumo using the Dedalus Project
FInding local minima for model parameters in the Fenton-Karma model.
Simple repository for the tuning of model parameters in the Fenton-Karma model using varied optimization strategies.
OpenMP parallelized 3D Fenton-Karma finite difference code. Not well optimized, but functions.
Repository for code for detangling sets of unordered points into a finite set of scroll wave filaments
Quenching stable structures in a front model using perturbations to the stable state.
Simple Python code and shell driver for the prediction of critical quenching perturbations
Minimally Disruptive Curves Test for cardiac models
Stable Diffusion with Core ML on Apple Silicon
A simple and modern LaTeX theme which can be used with pandoc
Improved Nano Syntax Highlighting Files
Short script in Julia which compares the performance of a neural network interpolant to a simple surrogate model for critical quenching prediction.
Repository for explorations of ordinal analysis and code-sharing
splitting the obs generation and movie-making repos
Some scripts for interpreting data and observation files for the purposes of feeding experimental data into our cardiacDA project.
A simple repository with set-up code for creating publication-matching figures in matplotlib, using Python and Julia.
Repository for reading restart, observation, and tips files for the cardiacDA project.
Implements translational symmetry-reduction by means of the first Fourier mode phase constraint.
Various thesis codes
Some baseline efficacies for time-series prediction of single-cell cardiac action potentials.