cmdoret Goto Github PK

acastellanii_genome_analysis

Comparative analysis of the genomes from two Acanthamoeba castellanii strains

acastellanii_genome_annotation

Reproducible container-based pipeline for the annotation of the Acanthamoeba castellanii genome

acastellanii_hybrid_assembly

Hybrid genome assembly of Acanthamoeba castellanii. Combining long reads, Hi-C and shotgun.

acastellanii_legionella_infection

Analysis of genomic changes induced in Acanthamoeba castellanii C3 following infection by Legionella pneumophila

archive_first_step

bioconda-recipes

Conda recipes for the bioconda channel.

calamus

A JSON-LD Serialization Libary for Python

case_studies

causalimpact

Python port of CausalImpact R library

chalcid_comparative_analysis

Comparative analysis of ecological variables between sex and asex species of Chaldidoidea.

clop

cmdoret

cmdoret.github.io

My personal website

csd_lfabarum

Genomics pipeline to reproduce the analysis from Matthey-Doret et al., 2019, Genome Biology and Evolution

dagws_seq_algo_materials

Slides and exercises from the "Sequence Algorithms" lectures I gave for the data analysis in genomics (DAG) workshop.

data_analysis

Reports for the advanced data analysis class

digiplant

dnaglider

Sliding window genome statistics on FASTA files

dotfiles

collection of configuration files

fsp_mls

First-step project for the Molecular Life Sciences Master in Bioinformatics, University of Lausanne

game_of_life

A small game written in python we made for a school project.

genome_assembly_tools

List of genome assembly tools

hic_reassembler

hic_scrambler

Introducing structural variations in Hi-C contact maps to try detecting and reversing them.

hicdoc

Hi-C detection of compartments

hicexperiment

hicreppy

Python reimplementation of hicrep with compatibility for sparse matrices

htslurp

slurp noodles-htsget streams into python

jigsaw-toxic-comment-classification-challenge-2018

Improving best solutions from an old competition for educational purpose

master_archive

Master project for the Molecular Life Sciences master in Bioinformatics, University of Lausanne