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cnstt's Projects

cookiecutter-napari-plugin

Cookiecutter for napari plugins

deep-finder

[THIS IS CURRENTLY ONLY A FORK DEDICATED TO napari-deepinder] Deep Finder is an original deep learning approach to localize macromolecules in cryo electron tomography images. The method is based on image segmentation using a 3D convolutional neural network.

deformation-segmentation

PyTorch implementation of Learning to Downsample for Segmentation of Ultra-High Resolution Images

earthparserdataset

genboxes

Generate simple synthetic 3D point clouds

isdnet

learnableearthparser

napari

napari: a fast, interactive, multi-dimensional image viewer for python

napari-deepfinder

A napari plugin for the DeepFinder library which includes display, annotation, target generation, segmentation and clustering functionalities. An orthoslice view has been added for an easier visualisation and annotation process.

napari-stracking

Napari plugin for particles tracking

omnipose

Repository for the Omnipose package and associated scripts for the paper.

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