cole-trapnell-lab Goto Github PK

atac-pipeline-dev

cicero

cicero-release

cole-trapnell-lab.github.io

cufflinks

ddrtree

An R implementation of the DDRTree algorithm for learning principal graphs

garnett

Automated cell type classification

hglasso

Learning graphical models with hubs

hooke

A package for comparing cell type abundances between conditions

hotfish

hsmmsinglecell

l1-graph

leidenbase

monocle

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/monocle.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=monocle.

monocle-release

monocle2-rge-paper

Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)

monocle3

plnmodels

A collection of Poisson lognormal models for multivariate count data analysis

pseudospace

ranninf

rccm

A modified cross-convergence mapping library

sci-plex

repository containing analysis scripts and auxiliary files

sci-plex-gxe

Repository of analysis code for sci-Plex-GxE analysis

sci-space

Contains all the code used in the analysis of the sci-Space paper

scribe

Regulatory networks with Direct Information

scrnaseqsim

A simulator for measuring developmental trajectories with single-cell RNA-seq

sdg-mutant-paper-code

Github repository containing our analysis code

sdg-zfish

tuxsim

worm-rna

The C. elegans transcriptome at single cell resolution