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connorcoley avatar connorcoley commented on May 27, 2024

Rather than having multiple tautomers as distinct library members, I imagine the best solution would be to have a canonicalization pipeline that tries to standardize representations so this isn't an issue, e.g., using RDKit's standardization with MolVS or roundtripping to/from InChI (if appropriate)

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likun1212 avatar likun1212 commented on May 27, 2024

thanks for your reply, this is really helpful.

I am not an expert on machine learning, naively I thought it is a good thing that providing more information(tautomers) for training the surrogate model.

so this is just not the case, I think. Thank you!

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