Space in fasta sequence causes quiet failure about salmon HOT 2 OPEN

Thanks for reporting this. Certainly, failure should be more apparent. Out of curiosity, is the failure in building the index? It looks like loading the index didn't work, so was the space character that caused the problem in your reference file?

--Rob

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Hi rob...

Yep, I found it with a binary search of the fasta reference file

On Friday, October 9, 2015, Rob Patro [email protected] wrote:

Thanks for reporting this. Certainly, failure should be more apparent. Out
of curiosity, is the failure in building the index? It looks like loading
the index didn't work, so was the space character that caused the problem
in your reference file?

--Rob

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Reply to this email directly or view it on GitHub
https://github.com/COMBINE-lab/salmon/issues/22#issuecomment-146996488.

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