Comments (3)
Are the directories empty?
If yes, this is related to a getpapers issue, and the behaviour is going to be fixed once the definite structure of ctree is settled. Meanwhile I added a small hack how to work around this issue between getpapers and norma:
cd test_eupmc_neylon
find -empty -delete
cd ..
from workshop-resources.
Yes, that was the problem. quickscrape timing out on article recovery also leads to empty directories which can also cause a problem apparently. Question - there are some bugs that relate to interactions between ContentMine components (we had issues yesterday with norma outputting in a form ami didn’t understand). How should those be raised?
Also would be good to get checkpointed VMs and/or containers that are known to work along the existing tool chain.
Cameron [email protected] - http://cameronneylon.net
@cameronneylon - http://orcid.org/0000-0002-0068-716X
On Tue, Jul 28, 2015 at 4:45 PM, Christopher KIttel
[email protected] wrote:
Are the directories empty?
If yes, this is related to a getpapers issue, and the behaviour is going to be fixed once the definite structure of ctree is settled. Meanwhile I added a small hack how to work around this issue between getpapers and norma:cd test_eupmc_neylon find -empty -delete cd ..
Reply to this email directly or view it on GitHub:
#8 (comment)
from workshop-resources.
Your suggestion of creating working containers for each step within the VM is going to be implemented in the next version, thank you for that!
from workshop-resources.
Related Issues (20)
- read how learning works
- Links to assessment survey and installation instructions missing from pre-workshop checklist
- Merging general workflow and check lists? HOT 2
- Wrong learning goals in fact session
- Screen shots for Bubbles
- Screen shots for IUCN on contentmine.org
- Alpha documentation for Canary HOT 2
- Add R2R and Responsible contentMining Tutorial
- Summarising and visualising results.xml
- offer guideline for direct follow up with interested persons
- Feedback from 2015-12-10-lifesciences workshop
- improve ami-tutorial
- improve navigation/usage HOT 1
- norma installation java error HOT 2
- broken links on Virtualbox workshop page HOT 2
- better docs for external dictionaries
- Tutorials as slidedecks / PDFs HOT 2
- Contentmine pipeline
- Cproject Structure Query HOT 2
- Can't open fulltext.pdf files.
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from workshop-resources.