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admixtools

Tools test whether admixture occurred and more

alpha

A toolkit for automated local phylogenomic analyses, or ALPHA

barrnap

:microscope: :leo: Bacterial ribosomal RNA predictor

bio_scripts

Practical scripts for bioinformatics

catfasta2phyml

Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file

csvkit

A suite of utilities for converting to and working with CSV, the king of tabular file formats.

easycodeml

ectools

tools for error correction and working with long read data

examl

Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI

gate

Genomics integrated Applications, also for Transcriptomics, Epigenetics, Evolution empirical analysis pipeline

gdc

Short scripts for converting genetic data between formats.

get_phylomarkers

A pipeline to select optimal markers for microbial phylogenomics, population genetics and genomic taxonomy

jcvi

Python utility libraries on genome assembly, annotation and comparative genomics

multi-metagenome

multiz

DNA multiple sequence aligner, official version from Penn State's Miller Lab

myscripts

ngs-pipeline

By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline

proovread

PacBio hybrid error correction through iterative short read consensus

psim

rnaseq

Scripts used by the Alverson lab for processing RNA-seq data

scripts

transcriptomes