Comments (1)
Hi Roberto,
this is indeed a bit weird. Which version are you using? This happens before LoFreq does anything at all. If you are running this on a cluster, could it be that this happens on one specific node and that something's wrong there with /tmp? You could also try to write to /tmp before you're running LoFreq (e.g. touch a file there), just to see if everything's okay with /tmp.
Andreas
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Related Issues (20)
- Issue during the make stage HOT 1
- lofreq_star-2.1.5_linux-x86-64 : ./lofreq: error while loading shared libraries: libhts.so.3 HOT 3
- Missing Variant with 90% AF HOT 2
- I have trouble to run bootstrap HOT 3
- Meaning of normal_relaxed, tumor_relaxed, .._stringent (question)
- Using LoFreq-NQ? HOT 3
- Adding genotype information HOT 7
- Force overwrite
- Quality scores HOT 1
- Problem with "lofreq call"
- /bin/sh: line 1: 16782 Killed and CRITICAL [2021-11-30 08:43:03,767]: Following command failed with status 137 HOT 5
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- Warning: Didn't find any variants in input HOT 2
- Lofreq call-parallel applies filters with --no-default-filter option specified HOT 2
- lofreq call-parallel will hang forever on subprocess error
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