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Carolyn Shasha's Projects

breast-cancer icon breast-cancer

Using anthropometric data to predict whether or not a given patient has breast cancer.

cancer-clust icon cancer-clust

Classifying RNA-Seq gene expression data by tumor type using unsupervised machine learning techniques.

mdf icon mdf

Magnetic Particle Imaging Data Format

mps-process icon mps-process

Script to import and process data from home-built magnetic particle spectrometer.

nano-learn icon nano-learn

Using machine learning to predict magnetic performance and heating efficiency of nanoparticles for imaging and cancer treatment.

nano-simulate icon nano-simulate

Stochastic simulation program to model nanoparticle dynamics.

scrna-r-python-conversion icon scrna-r-python-conversion

Conversion of SingleCellExperiment objects in R Bioconductor to AnnData objects in Scanpy for scRNA-seq analysis.

superscan icon superscan

Superscan: Supervised Single-Cell Annotation

systems-biology-of-disease icon systems-biology-of-disease

Course material and projects done for the Systems Biology of Disease course at the Institute for Systems Biology.

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