Comments (3)
thorellk
commented on August 28, 2024
1
You can find them in the CTMR uppmax project under
/projects/WGS/kaisa_projects/Brachyspira/513A_R*.fastq.gz
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boulund
commented on August 28, 2024
@thorellk, can you provide me with a sample input file that is contaminated with PhiX that I can use as a test?
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boulund
commented on August 28, 2024
Please double check that it works as you want it to @thorellk, otherwise open this up again.
I made it so that the Nextflow code prepends phix, to the adapter= argument to BBDuk. I think the code looks clean, and I hope it works well.
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Related Issues (20)
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- Update citation/publish pipeline HOT 25
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