cumberworth Goto Github PK

actinfriction.jl

A Julia package for simulating the dynamics of passively crosslinked actin rings.

actinfrictionpy

Python package for the dynamics analysis of the paper "Constriction of actin rings by passive crosslinkers".

actinrings

Python package for the equilibrium analysis of the paper "Constriction of actin rings by passive crosslinkers".

actinringsmc.jl

A Julia simulation package with functions for running adaptive umbrella sampling Monte Carlo simulations of crosslinked actin rings.

biblib

Simple, faithful BibTeX parser and algorithms for Python 3

bibtools

A set of tools for processing a reference database composed of bib files.

blobcrystallinoligomer

Modeling tools for simulations of oligomers consisting of very-coarse-grained representations of Alpha-B Crystallin.

caulobacter-crescentus-summary

A summary of the cell cycle in Caulobacter crescentus.

continuum-mechanics-and-fem-notes

Notes on Continuum mechanics, especially elasticity, and the finite element method (FEM).

cumberworth.github.io

dealii

The development repository for the deal.II finite element library.

elastic-rings

A program for solving geometrically non-linear elastic rings with the deal.II finite element method (FEM) library.

latex-templates

Templates for commonly created latex document types.

latticednaorigami

A program for running Monte Carlo simulations of a lattice model of DNA origami, especially for studying its self-assembly process.

latticednaorigami_old

Simulation tools for lattice DNA origami models with domain-level resolution.

matplotlib-label-lines

Label line using matplotlib.

matplotlibstyles

Styles and helper functions for matplotlib.

origamipy

Python package for analysis, visualization, and support for the LatticeDNAOrigami simulation program.

personal-website-hugo

reminder

toymd

MD program for understanding simulation fundamentals by implementation

ubcdiss

UBC Dissertation Template for LaTeX