czarnewski Goto Github PK

b_cell_in_mucosal_healing

This is a public repository containing the code used in "B cell expansion hinders the stroma-epitheoium regenerative crosstalk during mucosal healing"

benfeitas.github.io

Code for personal repo

bm_data

czarnewski

dotfiles

dotfile configuration

dotfiles-1

My personal collection of dotfiles.

ectocervix_chronic_hiv

eggplant

facs_analysis_in_r

hdca

human_developing_spinal_cord

ilc_tissue_imprinting

Repository contacting the code related to the article "Tissue-specific transcriptional imprinting and heterogeneity in human innate lymphoid cells revealed by full-length single-cell RNA-sequencing" Mazzurana, Czarnewski et al (2020) Cell Research

lung_mnp_sarcoidosis_rnaseq

This is a public repository for the code associated to the paper: Lepzien et al 2021 ERJ (doi:10.1183/13993003.03468-2020)

nicerlayouts

nicerplots

nord-vim

An arctic, north-bluish clean and elegant Vim theme.

picrust2

Code, unit tests, and tutorials for running PICRUSt2

project_based_learning

https://czarnewski.github.io/project_based_learning/

rcppml

Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more

scmousebcellflu

sco-community

A public repository to host the Single Cell Omics community webpage: https://elixir-europe.github.io/sco-community/

tissuumaps

TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUmaps can be used as a web service or locally in your computer, and allows users to share regions of interest and local statistics.

trust4

TCR and BCR assembly from RNA-seq data

uc_classification

This is a public repository for the code associated to the paper: Czarnewski et al 2019 Nat. Com.

vim

The official Vim repository

vim-markdown

Markdown Vim Mode

xfuse

Super-resolved spatial transcriptomics by deep data fusion