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awesome-transformers-in-medical-imaging

A collection of resources on applications of Transformers in Medical Imaging.

bpgan

bronchinet

Airway segmentation from chest CTs using deep Convolutional Neural Networks

ctgan

Conditional GAN for generating synthetic tabular data.

dataset

deedsbcv

new and more efficient version for 3D discrete deformable registration, reaching the highest accuracy in several benchmarks

deep-learning-dose-prediction

dpm-g4cpp

dpm-g4cpp is a C++ prototype of the Dose Planning Method (DPM): fast, accurate dose Monte Carlo simulation for photon, electron radiotherapy treatment planning. As a clean C++ implementation of the simulation, that doesn't contain any non-deterministic loops in the interaction sampling, it serves as a more suitable basis for GPU/FPGA implementation

egsnrc

Toolkit for Monte Carlo simulation of ionizing radiation — Trousse d'outils logiciels pour la simulation Monte Carlo du rayonnement ionisant

fastsearchlibrary

The multithreading library (.dll) that provides opportunity to fast find files or directories using different criteria.

g4hepem

Geant4 EM physics simulation R&D project looking for solutions to reduce the computing performance bottleneck experienced by HEP detector simulation applications.

geant4-beginner-course

lapirn

Large Deformation Diffeomorphic Image Registration with Laplacian Pyramid Networks

matmulfreellm

Implementation for MatMul-free LM.

metrics

Example of evaluation metrics used in the SynthRAD2023 challenge

mis-fm

mr-to-pct

MR to CT for TUS acoustic simulations

open-kbp-opt

Develop plan optimization models for knowledge-based planning in radiotherapy

painter

Painter & SegGPT Series: Vision Foundation Models from BAAI

preprocessing

Preprocessing scripts: from dicom to aligned nitfy for SynthRAD2023 Grand Challenge

pylinac

A TG-142 toolkit for doing routine linear accelerator quality assurance

pytorch-deeplabv3plus-3d

Deeplabv3 plus 3D version (in pytorch)

pytorch-medical-segmentation

This repository is an unoffical PyTorch implementation of Medical segmentation in 3D and 2D.

research-contributions

Implementations of recent research prototypes/demonstrations using MONAI.

sam-med2d

Official implementation of SAM-Med2D

swinunet3d

SwinUnet3D

synct_tcmrgfus

Official PyTorch Implementation of "Synthetic CT Skull Generation for Transcranial MR Imaging–Guided Focused Ultrasound Interventions with Conditional Adversarial Networks"

torchio

Medical image preprocessing and augmentation toolkit for deep learning

transmorph_transformer_for_medical_image_registration

TransMorph: Transformer for Unsupervised Medical Image Registration (PyTorch)

vmc

The Virtual Monte Carlo core library.