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Daniel Straub's Projects

ampliseq icon ampliseq

16S rRNA amplicon sequencing analysis workflow using QIIME2

bacass icon bacass

Simple bacterial assembly and annotation pipeline

mag icon mag

Assembly and binning of metagenomes

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nf-core-configs icon nf-core-configs

Config files used to define parameters specific to compute environments at different Institutions

nf-core-readsimulator icon nf-core-readsimulator

A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.

pipesidle icon pipesidle

Multipe region amplicon sequencing analysis with SMURF via Sidle in QIIME2

rnadeseq icon rnadeseq

Downstream differential gene expression analysis with DESeq2 package

rnaseq icon rnaseq

RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control

test-datasets icon test-datasets

Test data to be used for automated testing with the nf-core pipelines

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