Comments (2)
Sorry I've been swamped. I'll try to provide C. elegans index when I release the next version of HISAT2 (hopefully within one month).
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HISAT2 indexes for C. elegans are now available for download on the HISAT2 website.
from hisat2.
Related Issues (20)
- `hisat-3n-table` can not parse base quality correctly HOT 1
- directional-mapping mode is not consistent is flag and YZ tag.
- Issue with aligning with hisat2
- Any plans for supporting mac arm architecture?
- (ERR): hisat2-align died with signal 6 (ABRT) (core dumped) HOT 3
- Could not locate a HISAT2 index HOT 2
- Forcing alignment only to the forward reference for HISAT-3N HOT 1
- *** Error in `hisat2-build': double free or corruption (!prev): 0x00002b5724374370 *** HOT 1
- mapped read length
- Question regarding the runtime for hisat-3n-table
- hisat2-build DOES NOT work for me! HOT 1
- building standard hisat-3n indices with --base-change but not --repeat-index HOT 4
- "Local Graph Exploded" warning for hisat2 build using --snp,--haplotype,--exon and --ss.
- Hisat2 [Errno 2] No such file or directory
- Align ATAC-seq with Hisat2?
- error minimum intron length with hisat2 v. 2.2.1
- Repeat mapping with different result
- Feature request: Add support for xz and zstd
- hisat2 hangs aligning axolotl reads HOT 1
- Output files(.snp, .haplotype) of hisat2_extract_snps_haplotypes_*.py are empty
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