Related Issues (20)
- BUG: exons and splice sites don't raise an error when supplied as the index
- long processing time solved by --no-temp-splicesite
- hisat-3n for RNA align HOT 5
- Ensembl uses a one-based coordinate system, whereas UCSC uses a zero-based coordinate system.
- error 134
- hisat-3n directional-mapping and repeat mode on single-cell methylome data HOT 2
- (ERR): ValueError: invalid literal for int() with base 10: '.' HOT 1
- forks not cleaned up when `-x` passed file that does not exist
- libc++abi: terminating in hisat-3n-table HOT 5
- Bam output?
- hisat2 command error
- Genome Indexing - Encountered internal HISAT2 exception (#1) HOT 2
- `hisat-3n-table` can not parse base quality correctly HOT 1
- directional-mapping mode is not consistent is flag and YZ tag.
- Issue with aligning with hisat2
- Any plans for supporting mac arm architecture?
- (ERR): hisat2-align died with signal 6 (ABRT) (core dumped) HOT 3
- Could not locate a HISAT2 index HOT 2
- Forcing alignment only to the forward reference for HISAT-3N HOT 1
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