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Daniel Anderson's Projects

ncov2019-artic-nf icon ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

panaroo icon panaroo

An updated pipeline for pangenome investigation

pandora icon pandora

Pan-genome inference and genotyping with long noisy or short accurate reads

poppunk icon poppunk

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

primers-containers icon primers-containers

A repository for tasks to complete in the containers session of primers for predocs 2023.

snip-public icon snip-public

SNIP: SINGLE-SHOT NETWORK PRUNING BASED ON CONNECTION SENSITIVITY

snp_simulator icon snp_simulator

Simulate SNPs across a phylogenetic tree using a reference.

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