Comments (51)
nfahlgren
commented on August 20, 2024
Perhaps not necessarily the easiest (but maybe!) - are we seeing any deprecation warnings where folks could do some minor code updates to adjust for package compatibility? I'm thinking of the recent scikit-image fix for example
from plantcv.
nfahlgren
commented on August 20, 2024
Improve installation docs? Maybe include Jupyterlab desktop client?
from plantcv.
HaleySchuhl
commented on August 20, 2024
@joshqsumner
Deprecation warnings:
/home/runner/work/plantcv/plantcv/plantcv/plantcv/median_blur.py:7: DeprecationWarning: Please use `median_filter` from the `scipy.ndimage` namespace, the `scipy.ndimage.filters` namespace is deprecated.
plantcv/plantcv/fill_holes.py:8
/home/runner/work/plantcv/plantcv/plantcv/plantcv/fill_holes.py:8: DeprecationWarning: Please use `binary_fill_holes` from the `scipy.ndimage` namespace, the `scipy.ndimage.morphology` namespace is deprecated.
-
scipy.ndimage.morphology -
scipy.ndimage.filters
from plantcv.
nfahlgren
commented on August 20, 2024
@joshqsumner
We accidentally dropped testing coverage by 1 line in main. Could be an easy fix in analyze_objects
from plantcv.
HaleySchuhl
commented on August 20, 2024
Across MOST documentation pages (function_name.md) there is a code block with an example use of the function. Usually included is pcv.param.debug = "print" but this is legacy code that just has started to become more confusing than helpful. Good small PRs to just delete that line OR replace with "plot" .
When you start working on a new doc page, please ADD a comment and tag yourself!
- @lacostag (analyze shape)
- @sdkenney42 (analyze color)
- @leowlima (analyze boundary)
- @Stylopidae1793 (Joe) (analyze NIR)
- @jmgordon1223 (analyze_thermal_values)
- (apply_mask)
- @lchavez037 (auto_crop)
- @JoeDuenwald (analyze_spectral)
- @lchavez037 (acute_vertex)
- @JoeDuenwald (watershed)
- @JoeDuenwald (erode)
- @jmgordon1223 (canny edge detection)
from plantcv.
lacostag
commented on August 20, 2024
- @lacostag (analyze spectral)
from plantcv.
jmgordon1223
commented on August 20, 2024
@jmgordon1223 analyze thermal values change print to plot
from plantcv.
lacostag
commented on August 20, 2024
- @lacostag (apply mask)
from plantcv.
JoeDuenwald
commented on August 20, 2024
- @JoeDuenwald (analyze_stem)
from plantcv.
lchavez037
commented on August 20, 2024
@lchavez037 (auto_crop)
from plantcv.
JoeDuenwald
commented on August 20, 2024
- @JoeDuenwald (analyze_thermal_values)
from plantcv.
sdkenney42
commented on August 20, 2024
Sam- change print to plot in y-axis-psuedolandmarks
from plantcv.
lacostag
commented on August 20, 2024
- @lacostag auto_crop
from plantcv.
lchavez037
commented on August 20, 2024
@lchavez037 acute_vertex.md
from plantcv.
JoeDuenwald
commented on August 20, 2024
@JoeDuenwald watershed.md
from plantcv.
leowlima
commented on August 20, 2024
@leowlima gaussian_blur.md
from plantcv.
sdkenney42
commented on August 20, 2024
@sdkenney42 - [ ] white_balance
from plantcv.
leowlima
commented on August 20, 2024
- @leowlima gaussian_threshold.md
from plantcv.
leowlima
commented on August 20, 2024
- @leowlima HistEqualization
from plantcv.
sdkenney42
commented on August 20, 2024
- @sdkenney42 watershed
from plantcv.
JoeDuenwald
commented on August 20, 2024
- @JoeDuenwald erode
from plantcv.
jmgordon1223
commented on August 20, 2024
- @jmgordon1223 Canny Edge Detection print to plot
from plantcv.
lacostag
commented on August 20, 2024
- @lacostag cluster_contours print to plot
from plantcv.
lchavez037
commented on August 20, 2024
@lchavez037 skeletonize print to plot
from plantcv.
leowlima
commented on August 20, 2024
- @leowlima image_add.md
from plantcv.
sdkenney42
commented on August 20, 2024
- @sdkenney42 triangle_threshold
from plantcv.
sdkenney42
commented on August 20, 2024
- @sdkenney42 transform_rescale
from plantcv.
lacostag
commented on August 20, 2024
- @lacostag check_cycles
from plantcv.
jmgordon1223
commented on August 20, 2024
- @jmgordon1223 (closing)
from plantcv.
leowlima
commented on August 20, 2024
- @leowlima image_subtract
from plantcv.
JoeDuenwald
commented on August 20, 2024
- @JoeDuenwald distance_transform
from plantcv.
sdkenney42
commented on August 20, 2024
- @sdkenney42 stdev_filter
from plantcv.
leowlima
commented on August 20, 2024
- @leowlima landmark_reference_pt_dist
from plantcv.
JoeDuenwald
commented on August 20, 2024
- @JoeDuenwald dilate
from plantcv.
lchavez037
commented on August 20, 2024
@lchavez037 spatial_clustering
from plantcv.
JoeDuenwald
commented on August 20, 2024
- @JoeDuenwald custom_range_threshold
from plantcv.
leowlima
commented on August 20, 2024
- @leowlima laplace_filter
from plantcv.
sdkenney42
commented on August 20, 2024
- @sdkenney42 spectral_index
from plantcv.
jmgordon1223
commented on August 20, 2024
- @jmgordon1223 change print to plot in (Cluster Contours and Split Images)
from plantcv.
JoeDuenwald
commented on August 20, 2024
- @JoeDuenwald crop
from plantcv.
leowlima
commented on August 20, 2024
- logical_or
from plantcv.
lchavez037
commented on August 20, 2024
@lchavez037 stdev_filter.md
from plantcv.
sdkenney42
commented on August 20, 2024
- @sdkenney42 invert
from plantcv.
jmgordon1223
commented on August 20, 2024
- @jmgordon1223 print to plot (rgb to gray)
from plantcv.
sdkenney42
commented on August 20, 2024
- @sdkenney42 image_subtract
from plantcv.
leowlima
commented on August 20, 2024
Mean_Threshold.md
from plantcv.
sdkenney42
commented on August 20, 2024
- @sdkenney42 image_add
from plantcv.
leowlima
commented on August 20, 2024
median_blur
from plantcv.
sdkenney42
commented on August 20, 2024
- @sdkenney42 get_nir
from plantcv.
sdkenney42
commented on August 20, 2024
- @sdkenney42 find_objects
from plantcv.
leowlima
commented on August 20, 2024
naive_bayes_classifier
from plantcv.
Related Issues (20)
- Issues when compiling a workflow to .exe using Pyinstaller HOT 8
- error when running PlantCV over a flat directory of images HOT 2
- roi2mask documentation needs updating HOT 2
- Cropreporter imaging wavelengths HOT 4
- pcv.transform.find_color_card gives error "No color card found under current parameters" HOT 5
- Update Output observation ontology table
- Cannot open images in PlantCV 4.0.1 HOT 3
- Add missing module/function docstrings
- Relatively Approachable Deepsource Issues HOT 1
- Background Removal Not Working HOT 3
- Color correction with colorcard detection produces weird results in some lighting scenarios HOT 5
- update readme to include Deepsource badge
- Updates related Size Markers HOT 1
- Trait descriptions table
- Save metadata with "print_results" HOT 3
- Fisheye image distortion correction
- OSError: [Errno 22] Invalid argument: '/path/to/file.json' HOT 4
- Error in batch processing with 'NoneType' object has no attribute 'run_line_magic' HOT 3
- ROI Autogrid does not work with germination studies HOT 2
- Processing time with poor color correction HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from plantcv.