danielmk Goto Github PK

diserin

Valence-based Navigation Learning model including D-serine

encoi

A method to Estimate Neuronal Conductances by Impedance measurement.

ouropy

A python->NEURON interface primarily to create neuronal networks.

patchseq

An analysis pipeline for patch seq data, a combination of patch-clamp electrophysiology and single cell sequencing.

phase-to-rate

preprint_latex_template

pydentate

pydentate is a biophysically realistic computational model of the dentate gyrus, a hippocampal brain region associated with memory formation and a computation called pattern separation.

pydentateelife2020

pyDentate is a biophysically realistic computational model of the dentate gyrus, a hippocampal brain region associated with memory formation and a computation called pattern separation. This repository exists for computational reproducibility of Braganza et al. 2020, eLife.

python_scripting_cheatsheet

Patterns I use all the time in Python scripts.

ratinabox

A python package for modelling locomotion in complex environments and spatially/velocity selective cell activity.

sbi

Simulation-based inference toolkit

solutions

The mission of Project Drawdown is to help the world reach “Drawdown”— the point in the future when levels of greenhouse gases in the atmosphere stop climbing and start to steadily decline, thereby stopping catastrophic climate change — as quickly, safely, and equitably as possible.

spikefit

Use Brian2 with the brian2modelfitting toolbox to fit spiking point processes to whole-cell patch clamp recordings.

spikekit

A collection of Python scripts and modules that simulate spiking neural networks.

spine_annotations_processing

spinestats

A script to calculate statistics of spine dynamics from annotation sheets.

tempotron

valence_navigation_5htda

Code for a valence-based RL model of navigation in the hippocampus through DA/5-HT balance.