Giter VIP home page Giter VIP logo

Danuser Lab's Projects

3dcellshape icon 3dcellshape

3dCellShape implements measurement and analysis of geometric features on extracted 3D volumes of single cells from fluorescent imaging data.

debias icon debias

DeBias decouples global bias from direct interactions in co-orientation and co-localization data.

driscoll-worrying-paper icon driscoll-worrying-paper

Python code used to detect and track blebs frame-to-frame, and to analyze bleb size statistics before and after photoactivation.

focal-adhesion icon focal-adhesion

This focal adhesion package is a software that tracks, segments, classifies and analyzes the time series of focal- and nascent adhesions in an adhesion time-lapse images.

openlch icon openlch

Live Cell Histology: Extracting latent features from label-free live cell images using Adversarial Autoencoders

qfsm icon qfsm

Quantitative Fluorescent Speckle Microscopy

u-delineate icon u-delineate

A Matlab package for segmentation of filament and the orientation.

u-inferforce icon u-inferforce

u-inferforce (Traction Force Microscopy) is a MATLAB software that reconstructs traction forces of cells adhered on elastic gel doped with beads.

u-infotrace icon u-infotrace

Compute causal relationships between individual pixels in 2D videos over space and time to reveal salient dynamics using a variety of causal measures

u-integrate icon u-integrate

Pipeline for inference of Granger-causal relations in molecular systems to study actin regulation in lamellipodia

u-probe icon u-probe

Processing of raw ratiometric biosensor images (for example based on FRET) into fully corrected "ratio maps" or "activation maps" — images showing the localized activation of the biosensor.

u-register icon u-register

Analyze local cell edge motions (e.g. protrusion and retraction) and to locally sample intracellular fluorescence signals in 2D fluorescence microscopy data.

u-segment icon u-segment

A Matlab software package to do 2D cell segmentation.

u-segment3d icon u-segment3d

Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with outputs of any 2D segmentation method.

u-shape3d icon u-shape3d

Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces.

u-signal3d icon u-signal3d

The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cell surface, enabling comparison and machine-learning of signaling across morphologically diverse cell populations.

u-track icon u-track

Multiple-particle tracking designed to (1) track dense particle fields, (2) close gaps in particle trajectories resulting from detection failure, and (3) capture particle merging and splitting events resulting from occlusion or genuine aggregation and dissociation events

u-track3d icon u-track3d

Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the automated exploration of large volumetric sequences.

u-unwrap3d icon u-unwrap3d

Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quantification, data analysis and machine learning.

weems-septin-paper icon weems-septin-paper

Several post-processing scripts that analyze signal distributions on and near uShape3D-generated cell surfaces.

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.