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analysis_pipeline_wdl

Collection of WDL workflows based off the University of Washington TOPMed DCC Best Practices for GWAS. The WDL structure was based upon CWLs written by the Seven Bridges development team.

anvil-portal

The front-facing AnVIL user portal

app-schema

A place to document "app" definitions

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avram

azul

Metadata indexer and query service used for AnVIL, HCA, LungMAP, and CGP

azul-bigquery-emulator

BigQuery emulator server implemented in Go

azul-chalice

Fork of Chalice with fixes specific to Azul

azul-docker-elasticsearch

azul-docker-pycharm

Docker container to run PyCharm Community Edition

azul-github-labeler-action

github action to automatically apply orange label

azul-go-zetasqlite

A database driver library that interprets ZetaSQL queries and runs them using SQLite3

azul-tinyquery

A Python in-memory test stub for BigQuery, forked with specific fixes for Azul

azurepoc

Hello World Sping Service to demo deployment to azure

bard

Metrics collection service

bard-client

JavaScript library for shared client-side analytics across DSP

bdcat-integration-tests

This supports integration testing between components for the biodata catalyst grant.

bgzip

Fast streams for block gzip files.

biocore-data-model

BioCore Data Model

bond

Account linking service

bond-tests

Image for running bond tests

byod-to-terra

calhoun

Notebook preview service

cbas

cbas-ui

cellxgene-fargate

Host CZI's cellxgene on AWS Fargate

cla-test

clas

clinvar-ingest

Batch ETL pipeline to mirror ClinVar releases into the Jade Data Repository.

commons-sample-data

A repo to track various TOPMed and other datasets