david-hoffman,David Hoffman,davephoffman,github

My name is David P. Hoffman.

I'm a scientist/engineer who builds robust, high-performance optical systems and loves data and python

I've probed ultrafast chemical reactions, imaged nanoscale protein ultrastructure relationships, and implemented a high throughput screening platform. Now I'm applying optics 🔬 to omics 🧬.

David Hoffman's Projects

fsrs-labview

LabVIEW VI's for running a femtosecond stimulated Raman (FSRS) instrument

peaks

A package of utilities for finding, fitting and analyzing punctate image data.

probabilistic-programming-and-bayesian-methods-for-hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

pydecon

Image deconvolution algorithms in python

pyotf

python functions for simulating optical transfer functions

quot

Many ways to find dots in fluorescence microscopy images

simpleitk-notebooks

Jupyter notebooks for learning how to use SimpleITK

SMolPhot is an open-source operating system independent data analysis and visualization software package for data acquired by single molecule localization microscopy methods such as photo-activation localization microscopy. SMolPhot is written in python which make it platform independent and easy to develop open source software package.

Recommend Projects