Comments (1)
Related Issues (20)
- DockerFile
- OSError: [Errno 24] Too many open files [32514] Failed to execute script 'orthofinder' due to unhandled exception!
- Orthogroups vs Superfamily Family Tree
- Get order of concatenated sequences in SpeciesTreeAlignment.fa
- is it possible to specify a tree for orthofinder? HOT 1
- Identifying number of characters involved in species tree inference using -M msa option
- ValueError: setting an array element with a sequence.
- ERROR: external program called by OrthoFinder returned an error code: -9
- Inferring gene trees with for orthogroups with less than 4 sequences HOT 1
- Which directories for versions of Orthofinder v2.4.0 (or more recent) are valid with the HOGs?
- Issue with rerunning orthofinder "from trees" step -- Blast0_0.txt not found HOT 1
- -T raxml-ng——ERROR: Species tree inference failed HOT 1
- Duplicates of the same gene in Orthogroup sequence files HOT 3
- "Invalid escape sequence" errors while starting OrthoFinder HOT 1
- Hello! I have 11 .faa files in a folder. I ran orthofinder -d -f /public/home/newfasta -t 64 -o output_orthofinder. But after 13-14 minutes process failed. There is no error. I opened slurm.out file then checked. there was written like below. HOT 1
- total identical sequences clustered into one orthogroup, but the topology of gene tree divided into multiple clades HOT 1
- Species tree make_ultrameric.py not working HOT 1
- [Feature Request] Allow for passing options to Diamond and other dependencies HOT 1
- Single copy orthologs (SCO) are not being generated HOT 1
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from orthofinder.