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agotool

proteomics tools for GO-term or UniProt-keyword enrichment

cathsm-server

Backend server for protein structure modelling pipeline (CATH/SWISS-MODEL)

cmappy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

datasciencecoursera

datasharing

The Leek group guide to data sharing

deamidation

Calculate deamidation rates (Asparagine to Aspartic acid and Glutamine to Glutamic acid) of peptides/proteins/RawFiles for LC/MS data.

dotfiles

config files

fishers_exact_test

Fishers Exact Test for Python (Cython)

gunicorn

gunicorn 'Green Unicorn' is a WSGI HTTP Server for UNIX, fast clients and sleepy applications.

mod_sites_and_prob

command line script to parse modification sites and their probabilities from MaxQuant evidence.txt, optional setting to filter on probabilities

pandasintro

Interactive Data Analysis in Python with Pandas using Jupyter Notebook

pclap_tryp2lysc

This is a proteomics tool to map tryptic peptides to Lys-C peptides

protover

Automated protein turnover calculations from 15N partial metabolic labeling LC/MS shotgun proteomics data.

statistical-analysis-python-tutorial

Statistical Data Analysis in Python

tpp

Statistical analysis of Thermal Proteome Profiling experiments for drug-target detection by multiplexed proteomics