dburkhardt Goto Github PK

1kgp_dimred

Interactive demonstration of how to use PCA, t-SNE, and UMAP on genotype data from the Thousand Genome Project.

academic-www

📖 Documentation site for Academic Website Builder

anndata

Annotated data.

autodocsumm

Extending your autodoc API docs with a summary

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

batchbin

cellharmony-align

Single-Cell RNA-Seq community alignment function for matching query to reference cells.

celloracle

This is the alpha version of the CellOracle package

cellranger

10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

chimeraarts.org

Chimera's website content, built with Hugo.

cmappy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

cvxpy

A Python-embedded modeling language for convex optimization problems.

dburkhardt.github.io

diffxpy

Differential expression analysis for single-cell RNA-seq data.

ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

gruenlab

hugo-academic

📝 The website builder for Hugo. Build and deploy a beautiful website in minutes!

hugobasicexample

Example site to use with Hugo & Hugo Themes

jupyter-themer

Apply custom CSS styling to your jupyter notebooks

jupyter_highlight_selected_word

Jupyter notebook extension that enables highlighting every instance of the current word in the notebook

library-workshops

linter-pylint

Atom linter plugin for Python, using pylint.

mast

Tools and methods for analysis of single cell assay data in R

meghna-hugo

Meghna Hugo is a responsive one-page business template built with HTML5/CSS3, Hugo, JavaScript, and JQuery. The template is minimalist, lightweight, and fast loading.

memory-monitor

Monitors process group memory usage, sends periodic updates and warnings

misc

Personal scripts

neurips2021-notebooks

neurips2021_multimodal_viash

palantir

Single cell trajectory detection

personal_site

📝 Easily create a beautiful website using Academic, Hugo, and Netlify