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assembly-dereplicator

A tool for removing redundant genomes from a set of assemblies

assocplots

bbmap

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

cpang19

CPANG19 - Computational PANGenomics (2019)

dekupl

Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.

dsk

k-mer counting software

gatb-core

Core library of the Genome Analysis Toolbox with de-Bruijn graph

genabel

:exclamation: This is a read-only mirror of the CRAN R package repository. GenABEL — genome-wide SNP association analysis. Homepage: http://www.genabel.org, http://forum.genabel.org,<U+000a>http://genabel.r-forge.r-project.org/ Report bugs for this package: http://r-forge.r-project.org/tracker/?group_id=505

haploconduct

Haplotype-aware genome assembly toolkit

hbv_reference_graph_manuscript

hepatitis_b_virus_alignment

Scripts for Fully automated sequence alignment methods outperform traditional methods for phylogenetic analysis of hepatitis B viruses

kameris

A fast, user-friendly analysis and evaluation toolkit for some DNA sequence classification tasks

kmer-db

lrece

Long read error correction evaluation

ngmerge

Merging paired-end reads and removing adapters

pangenomics

phyloscanner

Phylogenetics between and within hosts at once, all along the genome.

population_based_controls_gwas_id_manuscript

pyseer

SEER, reimplemented in python 🐍🔮

rs-gfatovcf

Rust implementation of Flavia95's GFAtoVCF

sars-cov-2_workshop

seqwish

alignment to variation graph inducer

stdpopsim

A library of standard population genetic models

variant-graph-analysis

Measuring pairwise distances between population graphs built from variant data from the 1000 genomes project.

vgpop

Selection scans on VG