deanpettinga Goto Github PK
Type: User
Company: UC Berkeley
Bio: (he/him) PhD Candidate
Twitter: deanpettinga
Type: User
Company: UC Berkeley
Bio: (he/him) PhD Candidate
Twitter: deanpettinga
test singularity definition
bbcRNA: An R package for facilitating RNA-Seq analysis
Circle Damage Sequencing (CD-seq) Analysis workflow
personal website
Code for demultiplexing NovaSeq, NextSeq and iSeq. There is also a separate script for single-cell atac-seq
docker image recipe for gtc conversion with Illumina/BeadArrayFiles
ecc_caller is a pipeline designed to take Illumina NovaSeq paired end sequencing reads generated from isolated circular DNA and call eccDNA forming regions.
singularity container for edgeR
call somatic SNVs from whole exome sequence using tumor only (no matched normal)
RNA-seq workflow using STAR and DESeq2
snakemake workflow for bulk RNA-seq workflow using STAR-edgeR
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.