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My name is Dennis Brookner, and I'm a fifth-year Ph.D. student in Doeke Hekstra's lab in the Harvard Department of Molecular and Cellular Biology. I'm interested in using the tools of X-ray crystallography to learn how protein structure and dynamics contribute to function. Our lab's work on the data-processing side of crystallography can be found as part of Reciprocal Space Station

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In my free time, I'm a contributer to Puntalytics, a twitter account devoted to using open-source football analytics tools (nflfastR and formerly nflscrapR) to study punting in the NFL.

Dennis Brookner's Projects

bioviper icon bioviper

Enhancements to Biopython for working with biological data

careless icon careless

Merge X-ray diffraction data with Wilson's priors, variational inference, and metadata

ccbxray icon ccbxray

Notes and Tools for Analyzing MX Datasets from the CCB X-Ray Facility

colav icon colav

Calculate protein structural representations (dihedral angles, CA pairwise distances, and strain analysis) for downstream analysis (e.g., PCA, t-SNE, or UMAP).

dials icon dials

Diffraction Integration for Advanced Light Sources

doc2md icon doc2md

Simple Python docstring to Markdown parser

dxtbx icon dxtbx

Diffraction Experiment Toolbox

laue-index-assigner icon laue-index-assigner

A robust algorithm for assigning miller indices to Laue data from approximate indexing solutions.

music icon music

Find proper spellings of chords and scales given starting note and type

skimage3d icon skimage3d

A light extension of various `skimage.transform` functionality for 3D images

traytable icon traytable

A python package for tabulating crystallization results across many trays

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