deplanckelab Goto Github PK

areg

Processing of single-cell (Fluidigm C1 and 10x) and population (Truseq and brbseq) RNA-seq data related to Areg discovery and characterisation in mouse subcutaneous stromal vascular fraction cells

asap

ASAP : Automated Single-cell Analysis Pipeline

asap2_web

asap_web

ASAP web application

beverslitovchenko2018

Source code to support the paper: "Extensive mitochondrial population structure and haplotype-specific variation in metabolic phenotypes in the Drosophila Genetic Reference Panel"

bio373_geneticsandgenomics

Biofinformatics support for the Genetics and Genomics class (BIO373)

biss

Yeast one-hybrid screening for DNA-protein interactions

brb-seq

Code and scripts for reproducing figures of BRB-seq paper

brb-seqtools

Suite of tools for processing BRB-seq data

chromatin_modules

Chromatin Modules across cell types.The code

chromatinhd

High-definition modeling of chromatin + transcriptomics data

chromatinhd_manuscript

context-tfs

Material and source code for Kribelbauer et al.

dgrpool

Scripts used for the DGRPool ELife manuscript

dgrpool_web

DGRPool is a web application designed to serve as a comprehensive repository for Drosophila Genetic Reference Panel (DGRP) phenotyping datasets.

disco_source

enhpathy4

ENHPATHY Event IV - Hands-on session on analyzing single-cell data

fastreadcounter

Tool for fast counting of reads from BAM file into genomic ranges (GTF, BED, VCF)

frochaux_bousleiman_2020

live-seq

Live-seq

meireles-filho_litovchenko2019

Source code to support the paper: “Extensive tissue-specific expression variation and novel regulators underlying circadian behavior”

numts_aaeg

projects

a list of all projects

scfair

an initiative to standardize single-cell genomics data and promote findable, accessible, interoperable, and reusable single-cell data.

sib-asap-2023

Using ASAP for Single-Cell Analysis - 2023 Course

smartseq2

sspci

Somatic stem and progenitor cell identification based on single-cell RNA-sequencing data

tf-seq

Material and source code for TF-seq manuscript

tfseqtools

A suite of tools for the pre-processing of TF-seq data

updeplasrv1

Scripts for updeplasrv1 Web server (Dockerized)