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Type: User
Location: Madison, WI
Type: User
Location: Madison, WI
abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ
adegenet: a R package for the multivariate analysis of genetic markers
AGREP - approximate GREP for fast fuzzy string searching. Files are searched for a string or regular expression, with approximate matching capabilities and user-definable records. Developed 1989-1991 by Udi Manber, Sun Wu et al. at the University of Arizona. ISC open source license since Sept. 2014.
Validation of nonsynonymous snv and indel calls in Gallus gallus Marek's disease lymphomas
basic walk-throughs for alignment and variant calling from NGS sequencing data
filtering phix 1st
Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and rarefraction curve analysis. The most basic analysis only requires a BAM file, and outputs a web browser compatible xhtml to visualize/share/store/extract analysis results.
Aptamers are single-stranded nucleic acid or amino acid polymers that recognize and bind to targets with high affinity and selectivity. The Aptamer Base is a database of detailed, structured information about the experimental conditions under which aptamers were selected and their binding affinity quantified.
A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.
😎 Awesome lists about all kinds of interesting topics
count DNA sequence reads in BAM files
A comparison of different Oxford Nanopore basecallers
Convolutional neural network analysis for predicting DNA sequence activity.
Bioinformatics utilities
A powerful toolset for genome arithmetic.
An Analytical Framework for Big-Scale Single Cell Data
PyQt5 version of cadnano
Classifier for metagenomic sequences
A reference-assisted assembly tool for producing draft chromosome sequences.
Visualization of all roads within any city
R package for clustering strings by edit distance using graph algorithms (connected components and edge-betweeness)
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments
CrossMap is a python program to lift over genome coordinates from one genome version to another.
Workflow and script for converting genomic coordinates using MUMmer output and CrossMap
Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such as transposon based methods and Ultra II FS library preparation from NEB).
Wrapper script for easier read scrubbing with DASCRUBBER
A helpful 4-page data science cheatsheet to assist with exam reviews, interview prep, and anything in-between.
A collaboratively written review paper on deep learning, genomics, and precision medicine
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.