dieterich-lab Goto Github PK

3pd

Repository of the 3PD tool: Rapid design of optimal primers for chromosome conformation capture assays

analysis-of-structured-reporting

Supplement to the GMDS 2020 submission.

anonymizeandsynthesize

Code used to produce the results presented in the publication "Anonymize or Synthesize? - Privacy-Preserving Methods for Heart Failure Score Analytics"

appledashboard

Dashboard for analysis of Apple Watch data with interactive graphics.

asyh

The Anonymous Synthesizer for Health Data

baltica

Baltica: integrated differential junction usage

bareos-scripts

bioinfo-scripts

Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformaticians scripts/ folder

cardiac-concept-extraction

Supplementary material to the paper: CardioAnno – Towards a German Clinical Corpus Containing Cardiovascular Concepts

cardiode

cellplot

R package for the integrated visualisation of functional enrichment and expression data.

circtest

CircRNA testing and ploting R package

circtools

circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.

circular-rna-book

Supplementary data used in the book chapter

clinical_deid

De-Identification of Clinical Admission Notes using BiLSTM and Embedded Languages Models (ELMo) as Word Representation

comparisonofmetaboliclabeling

A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover

crc1550-inf-datamanagement

cyntenator

Cyntenator is a software for identification of conserved syntenic blocks between multiple genomes.

dcc

DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies a series of filters and integrates data across replicate sets to arrive at a precise list of circRNA candidates.

designmetabolicrnalabeling

On the optimal design of metabolic RNA labeling experiments

dorina

doRiNa - database of posttranscriptional regulatory elements

embo_circrna_course_2019

Scripts for the 2019 EMBO course on circular RNAs

fuchs

FUCHS - FUll circle CHaracterization from rna-Seq

gear

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

hbigs_course_2019

Public repository for the 2019 HBIGS course "Introduction to long and short RNA-seq analysis"

hbigs_course_2022

Introduction to computational RNA biology: splicing, translation and networks

highmeduccscores

Scoring functions of the HiGHmed use case Cardiology

immunomics

jacusa

JAVA framework for accurate SNV assessment

jacusa2

New version of JACUSA -> 2.0