ding-lab Goto Github PK
Name: Li Ding's Lab
Type: Organization
Bio: Li Ding's Lab at the Washington University School of Medicine
Location: St. Louis, MO, USA
Blog: dinglab.wustl.edu
Name: Li Ding's Lab
Type: Organization
Bio: Li Ding's Lab at the Washington University School of Medicine
Location: St. Louis, MO, USA
Blog: dinglab.wustl.edu
mapping somatic variants to cell barcodes in scRNA-Seq data
3D proximity visulization portal
Ancestry prediction from .bam files
Ding lab ancestry pipeline
Improved Bayesian inversion somatic caller
a wrapper for Bassovac tool
BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA
Bioinformatics data-mining
Convert birdseed variant file with genotypes to a VCF file
SV detection from paired end reads mapping
A comprehensive pipeline to analyze and visualize structural variants
Given two BAM files, a reference sequence, and regions of interest, count the AT, CG, or CpG sites with sufficient read-depth in both BAMs.
Create catalog files for sequence data generated by GTAC@MGI
This github repository contains the data files and analysis code used in "Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma"
Characterization of Germline variants
This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.
Cohort DNA Copy Number Analysis
call copy number from WES(WXS)
COrrecting CO-Occuring multi-Nucleotide variation
Gene/transcript expression; Fusion; de novo assembly
Ad hoc scripts to identify analyses needing to be performed for CPTAC3 contract work
Comprehensive QC of CPTAC3 sequence data
CPTAC3 RNA-seq splicing pipeline
Methylation array analysis pipeline for CPTAC
miRNA sequencing analysis for CPTAC
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