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Name: Dita Gudra
Type: User
Bio: Next-Gen sequencing
Location: Riga, Latvia
Name: Dita Gudra
Type: User
Bio: Next-Gen sequencing
Location: Riga, Latvia
adegenet: a R package for the multivariate analysis of genetic markers
Bacterial genome annotation and comparative analysis pipeline (for setup of chlamdb-type database)
Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Repository to reproduce results in the bovine graphs mapping paper
Species richness with high diversity
Create matplotlib plots with broken axes
exploratory and interactive microbiome analyses based on heatmaps
Calculate confidence scores from Kraken2 output
Count Regression for Correlated Observations with the Beta-binomial
Comparative, Rapid Analysis of Metagenomes
curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
Inference of microbial interaction networks from large-scale heterogeneous abundance data
Representation and manipulation of genomic intervals
Scalable genomic data analysis.
A growing repository of shell scripts to automate day-today activities of a NGS data analyst
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
A versatile simulation engine for stochastic population dynamics models.
Metagenomics Workshop
A general metagenomics data mining system focus on robust microbiome research
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
Quick mining and visualization of NGS data by integrating genomic databases
🌈 Interactive analysis of metagenomics data
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Phylogenetic and taxonomic analysis for genomes and metagenomes
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.