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Dita Gudra's Projects

adegenet icon adegenet

adegenet: a R package for the multivariate analysis of genetic markers

auto_barcode icon auto_barcode

Extracts fastq reads for specified barcode(s) from one or multiple FASTQ files

bandage icon bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

calour icon calour

exploratory and interactive microbiome analyses based on heatmaps

conifer icon conifer

Calculate confidence scores from Kraken2 output

corncob icon corncob

Count Regression for Correlated Observations with the Beta-binomial

cram icon cram

Comparative, Rapid Analysis of Metagenomes

cutprimers icon cutprimers

curPrimers is a tool for trimming primer sequences from amplicon based NGS reads

flashweave.jl icon flashweave.jl

Inference of microbial interaction networks from large-scale heterogeneous abundance data

hail icon hail

Scalable genomic data analysis.

i-shell-do-this icon i-shell-do-this

A growing repository of shell scripts to automate day-today activities of a NGS data analyst

karyoploter icon karyoploter

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

krakentools icon krakentools

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

master icon master

A versatile simulation engine for stochastic population dynamics models.

metapi icon metapi

A general metagenomics data mining system focus on robust microbiome research

metawrap icon metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

ngsplot icon ngsplot

Quick mining and visualization of NGS data by integrating genomic databases

pavian icon pavian

🌈 Interactive analysis of metagenomics data

phyloseq icon phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

phylosift icon phylosift

Phylogenetic and taxonomic analysis for genomes and metagenomes

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