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alireduce

Script for reducing GISAID SARS-CoV-2 sequence alignments based on nucleotide distance, sampling date and country

bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

basicrcourse_brand

basicrcourseemc

basicrcourseemc_slides

basta

Basic Sequence Taxonomy Annotator

biopython

Official git repository for Biopython (originally converted from CVS)

coursera

Repo for coursera exercises

covid-sequence-analysis-workflow

cyjshiny

An R/shiny widget for cytoscape.js

dashboards

Jupyter Dynamic Dashboards from Notebooks

datasharing

The Leek group guide to data sharing

diamond

Accelerated BLAST compatible local sequence aligner.

ena_sars_cov2_nanopore

Pipeline for mapping SARS-CoV2 nanopore reads using nextflow

igv.js

Lightweight html5 version of the Integrative Genomics Viewer

igvshiny

Shiny widget for igv.js

n-a-w

Nanopore Analysis Workflow a workflow for demultiplexing and mapping nanopore amplicon data

platform-comparison-arbovirus

This repository contains the scripts to reproduce the results and figures of the arbovirus platform comparison

porechop

adapter trimmer for Oxford Nanopore reads

primer-check

qtlshiny

A lightweight interactive interface for the qtl package in R

rhandsontable

A htmlwidgets implementation of Handsontable.js

rocker

R configurations for Docker

rocker-versioned

Run earlier versions of R using docker

shiny

Easy interactive web applications with R

shiny-docker

viromebrowser

ViromeBrowser Shiny App

vsearch

Versatile open-source tool for metagenomics

zika-tutorial

Data and scripts for Zika virus tutorial