Previously, I could run doconce jupyterbook src/file.do.txt<

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doconce jupyterbook: need for running in folder with do.txt file about doconce HOT 3 CLOSED

doconce commented on May 29, 2024

doconce jupyterbook: need for running in folder with do.txt file

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Comments (3)

aless80 commented on May 29, 2024

I can successfully run files in other directories such as doconce jupyterbook test/testdoc.do.txt --examples_as_exercises . How did you install doconce?

I thought this was solved in issue #114 . In commit 0bf7ad lib/doconce/jupyterbook.py does:

dirname, basename, ext, filename = find_file_with_extensions(sys.argv[1], allowed_extensions=['.do.txt'])
....
if dirname:
        os.chdir(dirname)

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lexnederbragt commented on May 29, 2024

I install doconce through a .yaml file that has this content and I follow the instructions in it:

# latest doconce, with scipy
# conda env create -f doconce_doconce_latest.yml
# or, to start from scratch,
# conda env create -f doconce_doconce_latest.yml --force
# install doconce via
# conda activate doconce_doconce_latest
# cd /Users/alexajo/github/doconce_doconce/
# git pull
# python setup.py install
# also add publish via
# pip install publish-doconce

name: doconce_doconce_latest
channels:
  - defaults
dependencies:
  - notebook
  - pip
  - python=3.6
  - pandas
  - matplotlib
  - scipy

I did a fresh install ('start from scratch') and the problem persists.

I can confirm being able to run doconce jupyterbook on test/testdoc.do.txt.

However, some more digging showed this - all in this executed in the root of the doconce repo folder:

1) test/testdoc.do.txt

mkdir book
doconce jupyterbook test/testdoc.do.txt --examples_as_exercises --dest=book --no_abort

Runs fine

doconce jupyterbook test/testdoc.do.txt --examples_as_exercises --dest=$PWD/book --no_abort

Gives the error

mkdir /Users/alexajo/Downloads/book
doconce jupyterbook test/testdoc.do.txt --examples_as_exercises --dest=/Users/alexajo/Downloads/book --no_abort

Gives the error.

2) testdoc.do.txt

cd test
mkdir book

Now all commands run fine:

doconce jupyterbook testdoc.do.txt --examples_as_exercises --dest=book --no_abort
doconce jupyterbook testdoc.do.txt --examples_as_exercises --dest=$PWD/book --no_abort
doconce jupyterbook testdoc.do.txt --examples_as_exercises --dest=/Users/alexajo/Downloads/book --no_abort

It seems to be a problem associated with paths in the --dest option when the command is run in a different folder than the do.txt file.

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aless80 commented on May 29, 2024

Moved to #124

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