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10x-thermite

Spliced short read aligner implemented in Rust

accuracode

AccuraCode® analysis pipeline

bam_stats

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

candle-esm

Evolutionary Scale Modeling (esm) Implemented Using Rust Candle.

cellranger

10x Genomics Single Cell Analysis

cibersortx

Repository for Cibersortx

compressed-factorization

cookiecutter-pypackage

Cookiecutter template for a Python package.

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

deepneo-mhc

peptide-MHC binding prediction tool

enclone

VDJ Clonotyping & Analysis Tools

enclone_ranger

Core components for enclone

evolocity

Evolutionary velocity with protein language models

fastq_pair

FASTQ pairing algorithms written in Rust

frontiers_cafs

gatk4-somatic-snvs-indels

This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.

gift

GIFT(Google Imapact Factor Tools) - Chrome/Edge plugin to get the Google Scholar Impact Factor

legoseq

Manipulating sequencing data is like playing with LEGO bricks.

legoseq-js

the front-end application of LegoSeq

lightning-hydra-template

PyTorch Lightning + Hydra. A very user-friendly template for ML experimentation. ⚡🔥⚡

lynxaligner

LynxAligner, is a sequence alignment software developed using Rust and the seed-extend algorithm

myocardial-remodelling

HCM and HF code

ngmergers

Rust wrapper of the NGmerge(https://github.com/harvardinformatics/NGmerge) api

parallel-cibersortx

polars

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

pydong

pidong's python toolbox

pyssw

Python interface for SIMD Smith-Waterman Library

react-todo

react-todo

react-wasm-template

using react import the wasm function compiled by rust