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>> The black cat is a CV Full-stack Engineer.

Focus on Autonomous Vehicles and Medical Images. Enthusiastic Deep-Learning worker (in large thread-pool).

Languages and Tools:

cplusplus   docker   python   javascript   tensorflow   pytorch   opencv   redis   scikit_learn   flask pandas  

  • 🌱 He's currently learning Streaming and Multi-Media Processing .

github    YouTube    zhihu

dr413677671's Projects

blast-pipeline-for-genes-and-genomes-alignment icon blast-pipeline-for-genes-and-genomes-alignment

The pipeline was initially designed to tackle the issue of automatically doing genes-to-genomes and genomes-to-genoems alignment using BLAST(The Basic Local Alignment Search Tool). It is consisted of three main fuctions: building up the testing samples genomes database in the directory db, runing BLASTing automatically to do pair-wise alignment of the query sequences(proteins or genomes)and the subject sequences- the database and sorting the overall outcome by filtering the coverage and identity values of the BLAST results.

protein_digester icon protein_digester

The Protein_digester script makes it easy to digest proteins. # # The program is able to cope with one or more protein sequences, and digest them # into small peptide sequences.The script subsequently also automatically generates # the outcome data in fasta format. It can also spot unusual amino acid or unknown # one, and allow user-defined cleavages. The optional enzyme in option are Trypsin, # Endoproteinase Lys-C, Endoproteinase Arg-C, V8 proteinase. # # As of Python >= 3.5.3, the script require some Python standard library. For # users who still need to support Python 3(Anaconda),several packages are required: # re(Regular expression), random and argparse, but also may support older Python # versions.

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