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Optimox avatar Optimox commented on July 26, 2024

Hello, you should have a look at this : https://www.kaggle.com/code/optimo/tabnetmultitaskclassifier

If all your tasks are classification then you just need to follow this notebook and you should be good to go.

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santurini avatar santurini commented on July 26, 2024

I am trying to replicate the example on my data. I preprocessed the data using a label encoder and filling the NA, and same for the two target columns. Then I defined categorical_dims as the list of unique values for each categorical variable (targets excluded) get the following error with the model defined like this:

clf = TabNetMultiTaskClassifier(
    n_steps=1,
    cat_idxs=cat_idxs,
    cat_dims=cat_dims,
    cat_emb_dim=12,
    optimizer_fn=torch.optim.Adam,
    optimizer_params=dict(lr=2e-2),
    scheduler_params={"step_size":50, "gamma":0.9},
    scheduler_fn=torch.optim.lr_scheduler.StepLR,
    mask_type='entmax',
    lambda_sparse=0, 
)
---------------------------------------------------------------------------
IndexError                                Traceback (most recent call last)
Cell In[61], [line 3]
      [1] max_epochs = 2
----> [3] clf.fit(
      [4]     X_train=X_train.values, y_train=y_train.values,
      [5]     max_epochs=max_epochs ,
      [6]     batch_size=1024,
      [7]     virtual_batch_size=12
      [8]     num_workers=1,
      [9]     drop_last=False,
     [10])

File pytorch_tabnet\abstract_model.py:258, in TabModel.fit(self, X_train, y_train, eval_set, eval_name, eval_metric, loss_fn, weights, max_epochs, patience, batch_size, virtual_batch_size, num_workers, drop_last, callbacks, pin_memory, from_unsupervised, warm_start, augmentations, compute_importance)
    (pytorch_tabnet/abstract_model.py:253) for epoch_idx in range(self.max_epochs):
    (pytorch_tabnet/abstract_model.py:254) 
    (pytorch_tabnet/abstract_model.py:255)     # Call method on_epoch_begin for all callbacks
    (pytorch_tabnet/abstract_model.py:256)     self._callback_container.on_epoch_begin(epoch_idx)
--> (pytorch_tabnet/abstract_model.py:258)     self._train_epoch(train_dataloader)
    (pytorch_tabnet/abstract_model.py:260)     # Apply predict epoch to all eval sets
    (pytorch_tabnet/abstract_model.py:261)     for eval_name, valid_dataloader in zip(eval_names, valid_dataloaders):

File pytorch_tabnet\abstract_model.py:489, in TabModel._train_epoch(self, train_loader)
    (pytorch_tabnet/abstract_model.py:486) for batch_idx, (X, y) in enumerate(train_loader):
    (pytorch_tabnet/abstract_model.py:487)     self._callback_container.on_batch_begin(batch_idx)
--> (pytorch_tabnet/abstract_model.py:489)     batch_logs = self._train_batch(X, y)
    (pytorch_tabnet/abstract_model.py:491)     self._callback_container.on_batch_end(batch_idx, batch_logs)
    (pytorch_tabnet/abstract_model.py:493) epoch_logs = {"lr": self._optimizer.param_groups[-1]["lr"]}

File pytorch_tabnet\abstract_model.py:527, in TabModel._train_batch(self, X, y)
    (pytorch_tabnet/abstract_model.py:524) for param in self.network.parameters():
    (pytorch_tabnet/abstract_model.py:525)     param.grad = None
--> (pytorch_tabnet/abstract_model.py:527) output, M_loss = self.network(X)
    (pytorch_tabnet/abstract_model.py:529) loss = self.compute_loss(output, y)
    (pytorch_tabnet/abstract_model.py:530) # Add the overall sparsity loss

File torch\nn\modules\module.py:1532, in Module._wrapped_call_impl(self, *args, **kwargs)
   (torch/nn/modules/module.py:1530)     return self._compiled_call_impl(*args, **kwargs)  # type: ignore[misc]
   (torch/nn/modules/module.py:1531) else:
-> (torch/nn/modules/module.py:1532)     return self._call_impl(*args, **kwargs)

File torch\nn\modules\module.py:1541, in Module._call_impl(self, *args, **kwargs)
   (torch/nn/modules/module.py:1536) # If we don't have any hooks, we want to skip the rest of the logic in
   (torch/nn/modules/module.py:1537) # this function, and just call forward.
   (torch/nn/modules/module.py:1538) if not (self._backward_hooks or self._backward_pre_hooks or self._forward_hooks or self._forward_pre_hooks
   (torch/nn/modules/module.py:1539)         or _global_backward_pre_hooks or _global_backward_hooks
   (torch/nn/modules/module.py:1540)         or _global_forward_hooks or _global_forward_pre_hooks):
-> (torch/nn/modules/module.py:1541)     return forward_call(*args, **kwargs)
   (torch/nn/modules/module.py:1543) try:
  (torch/nn/modules/module.py:1544)     result = None

File pytorch_tabnet\tab_network.py:615, in TabNet.forward(self, x)
    (pytorch_tabnet/tab_network.py:614) def forward(self, x):
--> (pytorch_tabnet/tab_network.py:615)     x = self.embedder(x)
    (pytorch_tabnet/tab_network.py:616)     return self.tabnet(x)

File torch\nn\modules\module.py:1532, in Module._wrapped_call_impl(self, *args, **kwargs)
   (torch/nn/modules/module.py:1530)     return self._compiled_call_impl(*args, **kwargs)  # type: ignore[misc]
   (torch/nn/modules/module.py:1531) else:
-> (torch/nn/modules/module.py:1532)     return self._call_impl(*args, **kwargs)

File torch\nn\modules\module.py:1541, in Module._call_impl(self, *args, **kwargs)
   (torch/nn/modules/module.py:1536) # If we don't have any hooks, we want to skip the rest of the logic in
   (torch/nn/modules/module.py:1537) # this function, and just call forward.
   (torch/nn/modules/module.py:1538) if not (self._backward_hooks or self._backward_pre_hooks or self._forward_hooks or self._forward_pre_hooks
   (torch/nn/modules/module.py:1539)         or _global_backward_pre_hooks or _global_backward_hooks
   (torch/nn/modules/module.py:1540)         or _global_forward_hooks or _global_forward_pre_hooks):
-> (torch/nn/modules/module.py:1541)     return forward_call(*args, **kwargs)
   (torch/nn/modules/module.py:1543) try:
   (torch/nn/modules/module.py:1544)     result = None

File pytorch_tabnet\tab_network.py:890, in EmbeddingGenerator.forward(self, x)
    (pytorch_tabnet/tab_network.py:887)         cols.append(x[:, feat_init_idx].float().view(-1, 1))
    (pytorch_tabnet/tab_network.py:888)     else:
    (pytorch_tabnet/tab_network.py:889)         cols.append(
--> (pytorch_tabnet/tab_network.py:890)             self.embeddings[cat_feat_counter](x[:, feat_init_idx].long())
    (pytorch_tabnet/tab_network.py:891)         )
    (pytorch_tabnet/tab_network.py:892)         cat_feat_counter += 1
    (pytorch_tabnet/tab_network.py:893) # concat

File torch\nn\modules\module.py:1532, in Module._wrapped_call_impl(self, *args, **kwargs)
   (torch/nn/modules/module.py:1530)     return self._compiled_call_impl(*args, **kwargs)  # type: ignore[misc]
   (torch/nn/modules/module.py:1531) else:
-> (torch/nn/modules/module.py:1532)     return self._call_impl(*args, **kwargs)

File torch\nn\modules\module.py:1541, in Module._call_impl(self, *args, **kwargs)
   (torch/nn/modules/module.py:1536) # If we don't have any hooks, we want to skip the rest of the logic in
   (torch/nn/modules/module.py:1537) # this function, and just call forward.
   (torch/nn/modules/module.py:1538) if not (self._backward_hooks or self._backward_pre_hooks or self._forward_hooks or self._forward_pre_hooks
   (torch/nn/modules/module.py:1539)         or _global_backward_pre_hooks or _global_backward_hooks
   (torch/nn/modules/module.py:1540)         or _global_forward_hooks or _global_forward_pre_hooks):
-> (torch/nn/modules/module.py:1541)     return forward_call(*args, **kwargs)
   (torch/nn/modules/module.py:1543) try:
   (torch/nn/modules/module.py:1544)     result = None

File torch\nn\modules\sparse.py:163, in Embedding.forward(self, input)
    (torch/nn/modules/sparse.py:162) def forward(self, input: Tensor) -> Tensor:
--> (torch/nn/modules/sparse.py:163)     return F.embedding(
    (torch/nn/modules/sparse.py:164)         input, self.weight, self.padding_idx, self.max_norm,
    (torch/nn/modules/sparse.py:165)         self.norm_type, self.scale_grad_by_freq, self.sparse)

File torch\nn\functional.py:2264, in embedding(input, weight, padding_idx, max_norm, norm_type, scale_grad_by_freq, sparse)
   (torch/nn/functional.py:2258)     # Note [embedding_renorm set_grad_enabled]
   (torch/nn/functional.py:2259)     # XXX: equivalent to
   (torch/nn/functional.py:2260)     # with torch.no_grad():
   (torch/nn/functional.py:2261)     #   torch.embedding_renorm_
   (torch/nn/functional.py:2262)     # remove once script supports set_grad_enabled
   (torch/nn/functional.py:2263)     _no_grad_embedding_renorm_(weight, input, max_norm, norm_type)
-> torch/nn/functional.py:2264) return torch.embedding(weight, input, padding_idx, scale_grad_by_freq, sparse)

IndexError: index out of range in self

from tabnet.

Optimox avatar Optimox commented on July 26, 2024

Looks like one of the categories is out of range, you must have integers between 0 and cat_dim-1 for each categorical column.

from tabnet.

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