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archive-edaseq

Archived version of EDASeq

archive-ruvseq

Archived version of RUVSeq

archive-scrnaseq

Archived version of the scRNAseq Bioconductor package. All future development will be done at https://github.com/LTLA/scRNAseq

archive-singlecellexperiment

This is the archived version of SingleCellExperiment with the history before Bioc submission.

archive-zinbwave

Archived version of the zinbwave package. All future development will be done on https://github.com/drisso/zinbwave

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

awst

Asymmetric Winsorization per Sample Transformation

awst_analysis

Code to reproduce the analyses of the AWST paper

bioc2016singlecell

Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor

bioc2019singlecell

bioc_coc_multilingual

Multilingual version of the Bioconductor Code of Conduct

biocneighbors

Clone of the Bioconductor repository for the BiocNeighbors package.

bioconductor20yearsslides

Carousel of xaringan slides to celebrate 20 years of the Bioconductor project.

biocstickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

canazei

Slides for 2018 Winter School

compgen_berlin2016

csama

Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology

czi_demo

CZI demo: Large-scale clustering in Bioconductor

deconsgl

Deconvolution of RNA-Seq Via Sparse Group Lasso

deplabdata

clean some datasets

easy-data

easy access to benchmark datasets

edaseq

Clone of the Bioconductor repository for the EDASeq package, see https://bioconductor.org/packages/devel/bioc/html/EDASeq.html for the official development version.

eurobioc2023

fastpca

filtergenes

filtering

fletcher2017data

Data from the Fletcher et al (2017) paper in SingleCellExperiment format

irkernel

R kernel for IPython

iscb.course

Bioconductor course at ISCB44

ismb.osca