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aiv_seeker

AIV_seeker is optimized for detecting and identification of Avian Influenza Virus from metagenomics data.

algorithms

This repository contains basic computer algorithms and some optimization codes for various programming challenges.

artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

assembly

Pipelines for assembling NGS data from Seattle flu study.

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-nanopore

A curated list of awesome nanopore analysis tools.

baitfisher-package

The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:

bio--kmer

A perl module for kmer counting

bioid

Source files for online resources of Bioinformatics of Infectious Diseases course

blast2lca

Calculates the lowest common ancestors of each query sequence in a Blast result

cc_data_manager

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

cidgoh_ip_monitor

cidgoh_qc

Workflow for quality check for NGS data

coding_for_big_data

X things you should take into consideration if you code for big data analysis

confindr

Intra-species bacterial contamination detection

covid-19-baits

Related files pertaining to a SARS-CoV-2 bait capture platform.

covid-19-signal

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

covid19

JSON time-series of coronavirus cases (confirmed, deaths and recovered) per country - updated daily

covizu

Rapid analysis and visualization of coronavirus genome variation

eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

flu-prediction

Predicting Future Influenza Virus Sequences with Machine Learning

friday20thmay

Tutorials and Presentations for the Friday 20th May

galaxy-client

Galaxy web api client library

galaxy-pipeline

Wrappers, scripts and configuration files for running cluster and identification analysis on a Galaxy installation.

ggfree

ggplot2-style plots with base R graphics

greaterwms

This Inventory management system is the currently Ford Asia Pacific after-sales logistics warehousing supply chain process . After I leave Ford , I start this project . In order to help some who need it . OneAPP Type . Support scanner PDA, mobile APP, desktop exe, website as well .

hello

Classic hello world script in Nextflow language

hello-world

influenza-analysis

Workflow for analysing influenza viral 5' end sequencing data.