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addi-gwas-qc-pipeline

QC pipeline for ADDI longitudinal GWAS

airbnb_scraper

airbnb rental scraper for real estate business

clusterbuster

cnvs

CNV pipelines from raw genotype data (.idat)

genomestudio

A few methods of using Illumina's Genome Studio for genotype calling

genotools

GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comprehensive sample/variant QC, and ancestry estimation. Ideal for computational biology and genetics research.

genotools_cloud_scripts

genotyping_scripts

a repo for general-purpose genotype data scripts

gp2_ref_panel_processing

code to process genotyping reference panel and run pca and faststructure for the Global Parkinson's Disease Genetics Consortium (GP2)

gp2_sample_check

gt_slurm

setup for genotools slurm cluster using terraform

gwas

NO LONGER UNDER DEVELOPMENT. REPLACED BY: https://github.com/dvitale199/GenoTools A repository containing QC and GWAS automated with python

heart-disease-bayesian-logistic-regression-with-jags-and-r

open_targets_api_utils

This repository contains functions for querying open targets

plant-classification

rare_variants

This project is attempting to use missing heritability to find rare variants related to Parkinson's Disease

sklearn-hyperparameter-tuning-and-model-selection

twas

code to run twas utilizing https://github.com/gusevlab/fusion_twas to run the analysis