lines extend to gene model with geom_junction_label_repel about ggtranscript HOT 4 CLOSED

On Sat, Nov 26, 2022 at 1:22 PM David Zhang ***@***.***> wrote: Hi - thanks for your feedback on ggtranscript! I'm unable to reproduce this issue and can't spot anything wrong in the code or environment. The grey boxes representing the CDS (which should be generated by geom_range(data = sod1_201_cds)) are also missing from your plot - are you sure this is the plot generated by your attached code? On a fresh R session, could you try running the code below and let me know if the outputted plot still has the geom_junction_label_repel issue: library(ggtranscript) library(ggplot2) library(dplyr) library(magrittr) sod1_exons <- sod1_annotation %>% dplyr::filter(type == "exon") sod1_cds <- sod1_annotation %>% dplyr::filter(type == "CDS") sod1_201_exons <- sod1_exons %>% dplyr::filter(transcript_name == "SOD1-201") sod1_201_cds <- sod1_cds %>% dplyr::filter(transcript_name == "SOD1-201") sod1_202_exons <- sod1_exons %>% dplyr::filter(transcript_name == "SOD1-202") sod1_202_cds <- sod1_cds %>% dplyr::filter(transcript_name == "SOD1-202") sod1_junctions <- sod1_junctions %>% dplyr::mutate(transcript_name = "SOD1-201") sod1_201_exons %>% ggplot(aes( xstart = start, xend = end, y = transcript_name )) + geom_range( fill = "white", height = 0.25 ) + geom_range( data = sod1_201_cds ) + geom_intron( data = to_intron(sod1_201_exons, "transcript_name") ) + geom_junction( data = sod1_junctions, junction.y.max = 0.5 ) + geom_junction_label_repel( data = sod1_junctions, aes(label = round(mean_count, 2)), junction.y.max = 0.5 ) — Reply to this email directly, view it on GitHub <#8 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AWTHDPFG7RSQFCK76TW3RMDWKIFHTANCNFSM6AAAAAASBGDVCY> . You are receiving this because you authored the thread.Message ID: ***@***.***>