Comments (5)
relevant error messages pasted on IRC:
(.text+0x20): undefined reference to `main'
ATL_f77wrap_gesv.c:(.text+0x64): undefined reference to `ATL_xerbla'
ATL_f77wrap_getnb.c:(.text+0x5): undefined reference to `ATL_dGetNB'
ATL_f77wrap_getrf.c:(.text+0x6a): undefined reference to `ATL_xerbla'
ATL_f77wrap_getnb.c:(.text+0x5): undefined reference to `ATL_sGetNB'
ATL_f77wrap_gesv.c:(.text+0x64): undefined reference to `ATL_xerbla'
ATL_f77wrap_getnb.c:(.text+0x5): undefined reference to `ATL_zGetNB'
ATL_f77wrap_getrf.c:(.text+0x6a): undefined reference to `ATL_xerbla'
ATL_f77wrap_getnb.c:(.text+0x5): undefined reference to `ATL_cGetNB'
ATL_getrfC.c:(.text+0x296): undefined reference to `ATL_zcplxinvert'
ATL_getrfR.c:(.text+0x294): undefined reference to `ATL_zcplxinvert'
collect2: ld returned 1 exit status
Running from numpy source directory./home/clusterusers/fgeorgatos/.local/easybuild/build/Python/3.2.3/goalf-1.1.0-no-OFED/numpy/numpy-1.6.1/build/py3k/numpy/distutils/system_info.
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
the ATLAS environment variable.
warnings.warn(AtlasNotFoundError.__doc__)
Atlas (http://math-atlas.sourceforge.net/) libraries not found.
Directories to search for the libraries can be specified in the
numpy/distutils/site.cfg file (section [atlas]) or by setting
from easybuild-framework.
Just to clarify: this occurs when building the numpy packages in the Python 3.2.3 module, using the goalf-1.1.0-no-OFED toolkit.
from easybuild-framework.
The build is failing on my end with your branch as well, but I'm not sure whether it has the same cause.
I'm not seeing the "undefined reference to ATL_xxx" stuff, but the build does crash.
I dived into the log, this seems to be the cause:
== 2012-08-18 17:39:47,977 eb_Python INFO No class found for eb_numpy, using default eb_DefaultPythonPackage instead.
== 2012-08-18 17:39:47,977 eb_Python DEBUG Installing package eb_numpy through default class eb_DefaultPythonPackage
You renamed the Numpy
class to eb_Numpy
, while it should be eb_numpy
. numpy
(lower-case) is the official name of the package, hence...
Same for Nose
to eb_nose
and Scipy
to eb_scipy
.
Testing now whether this fixes the build.
from easybuild-framework.
The fix above does fix the issue. @fgeorgatos, see fgeorgatos/easybuild#1 to this fix into your repo online (and then just pull from your repo again in your working copy using git pull origin 86_encoding_scheme
).
Side-note: building only Python packages in an existing Python installation is broken because of #104.
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Fix worked on @fgeorgatos end, pull request for his branch is coming up, so closing this.
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