Comments (2)
I checked this for the Kleiner and Neto data set. Kleiner is not affected at all (because we combine PPRmeta results with VF results anyway) but some changes for Neto:
For Neto we reduce the number of unclassified contigs from 105 to 92. We also lose some Imitervirales annotations though.
from emg-viral-pipeline.
I would still do this and implement a parameter for the PPR-Meta filtering and not just taking all hits that are phage
into account. A good default seems >0.7
from emg-viral-pipeline.
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from emg-viral-pipeline.