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The Eddy/Rivas Laboratory's Projects

easel icon easel

Sequence analysis library used by Eddy/Rivas lab code

hmmer icon hmmer

HMMER: biological sequence analysis using profile HMMs

infernal icon infernal

RNA secondary structure/sequence profiles for homology search and alignment

labbib icon labbib

Lab's BibTex bibliography, and tools

null-model icon null-model

Repository to hold work on a new null model for HMMER and Infernal

pknots icon pknots

A dynamic programming algorithm for RNA pseudoknot prediction

r-scape icon r-scape

RNA Structural Covariation Above Phylogenetic Expectation

r-scape-web icon r-scape-web

RNA Structure-driven Covariation Above Phylogenetic Expectation (web application)

tornado icon tornado

A general purpose parser to produce grammars of single-sequence RNA secondary structure

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