Comments (6)
Hi, what was the error exactly? If you write the path to the output folder with the option --output-folder
the output files will be saved there. This is described in the README page.
Edgardo
from vcf2phylip.
Also keep in mind that the code was tested on Linux and Mac, from your description of a C drive I guess you are using Windows, it should work too but you have to be careful as to how you type the route to the output folder
from vcf2phylip.
from vcf2phylip.
I understand, in your command add the path to the destination you want with the option --output-folder
Python commands can take multiple options (-i ,--output-folder, etc). Your command will have to be something like the following, where you have to replace path_to_my_D by the actual path in your computer (that can be something like D://myfiles/ but I'm not sure exactly because I haven't used Windows in a while...)
vcf2phylip.py -i myfile.vcf --output-folder path_to_my_D
Edgardo
from vcf2phylip.
from vcf2phylip.
Glad to have helped!
from vcf2phylip.
Related Issues (20)
- Hours taken to find the ploidy HOT 9
- Give option for name and directory of output file HOT 3
- Installation problem HOT 3
- transfer vcf file of SV into phylip failed HOT 5
- Invalid character * in the alignment HOT 10
- Coordinates of alignment sites HOT 2
- UnboundLocalError: local variable 'used_sites' referenced before assignment HOT 3
- Max character length for seq IDs HOT 2
- Deciding an outgroup to root the tree HOT 1
- error HOT 1
- ImportError: No module named pathlib HOT 2
- Can't regonized by Treebest to buid NJ tree
- All of the SNPs were removed by vcf2phylip HOT 3
- SNPs that passed the filters: 0 HOT 5
- All SNPs were removed by vcf2phylip HOT 3
- error: unexpected end-of-file. HOT 2
- unexpected token 'newline' error HOT 2
- KeyError: '2': always met this error when converting a vcf file to phylip file. HOT 5
- issues convert vcf file to phylyp HOT 9
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