Edward Wenger's Projects
Visualize epidemic cases in China
Exploration of demographic simulation + visualization with Bevy Engine
Generic cellular automaton plugin for bevy.
A test repository for Binder and JupyterHub exploration
An exploratory project using boost::numeric::odeint
dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
An Ubuntu 18.04 pre-built EMOD executable and the minimal environment in which to run it
Docker environment to explore pybind11 and binder
Exploration of ECS/DOTS pattern in Unity for demographic simulation
A collection of Jupyter notebooks as examples of using EMOD libraries from Python
Python bindings of ported EMOD C++ libraries for disease-transmission modeling
Fast prototyping of epidemiological models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.
Data, analysis, visualization of 2014-2015 West African Ebola outbreak
Example D3.js + React integration
Standalone Flecs project with embedded graphics modules
React app to help kids pick and track NFL odds with their grandpa
Kubernetes development cluster in GitHub Codespaces
Mesa is a agent-based modeling framework in Python
Visualization of parasite population dynamics
Explore server-side logic for multiplayer HTML5 games
An interactive visualization of AFP reported in Pakistan and Afghanistan
Simple S, I, R with constant population, tracking individual infections and constructing lineage trees
Parse PubMed data to explore career trajectories of scientists on different continents