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Name: enrico
Type: User
Bio: Bioinformatician
Location: Department of Molecular Medicine - University of Padova, Italy
Name: enrico
Type: User
Bio: Bioinformatician
Location: Department of Molecular Medicine - University of Padova, Italy
Build Docker container for circompara2
Run CirComPara2 through Nextflow
Utility R functions for CirComPara2
An RNA-seq simulator for circular RNA expression
comprehensive comparison of differential expression models applied to circRNA count matrix
:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
:whale: Docker image for CirComPara
Improved bioinformatic pipeline to identify and quantify circRNA expression from RNA-seq data by combining multiple circRNA detection methods
CRAFT is a computational pipeline that predicts circRNA sequence and molecular interactions with miRNAs and RBPs, along with their coding potential. CRAFT provides a comprehensive graphical visualization of the results, links to several knowledge databases, extensive functional enrichment analysis and combination of predictions for different circRNAs. CRAFT is a useful tool to help the user explore the potential regulatory networks involving the circRNAs of interest and generate hypotheses about the cooperation of circRNAs into the regulation of biological processes.
Circular RNA Expression Analysis R Tools
The Leek group guide to data sharing
Benchmarking differential expression methods on circRNA RNA-seq data
Plotting Assignment 1 for Exploratory Data Analysis
Coursera course Getting and Cleaning Data project
:microscope: A bioinformatics software pipeline to characterize miRNAs and moRNAs from small RNA-seq data
Repository for Programming Assignment 2 for R Programming on Coursera
Project assignment for the Regression Models course on Coursera
Peer Assessment 1 for Reproducible Research
R package for differential expression: sequencing counts (RNAseq), microarrays, and HTRNAi
Project assignment for the Statistical Inference course on Coursera
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