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airr-standards

AIRR Community Data Standards

appdesign

auspice

Web app for visualizing pathogen evolution

auth0-data-storage-scenarios-sample

auth0-node-data-api

Example BACKEND for mobile app to provide auth0 users with an end-to-end experience of storing user data appropriately

auth0-swift-data-app

Example mobile app to provide auth0 users with an end-to-end experience of storing user data appropriately/efficiently in their applications

bcr-phylo-benchmark

cft

Clonal family tree

containers

Bioinformatics containers

docs

Auth0 documentation

docs.nextstrain.org

A prototype umbrella documentation project for Nextstrain

gh-actions-deploy

Template for deploying container / doing continuous integration using github actions

hiring-frontend-engineer

idp-template

individual career development plan

lineageplots

A visualization tool to create plots highlighting mutations in antibody lineages

ncov

Nextstrain build for novel coronavirus SARS-CoV-2

nextflow-cli-template

A template repository for running a Python CLI using Nextflow.

nextstrain.org

The Nextstrain website

nf-core-aligngenomes

Align one/more WGS datasets against one/more reference genomes

pandoc-scholar

Create beautiful and semantically meaningful articles with pandoc.

partis

B- and T-cell receptor sequence annotation, simulation, clonal family, and germline inference

react-redux

Official React bindings for Redux

redux

Predictable state container for JavaScript apps

renaissancegan

2017/18 CC CS Senior Project on Generative Adversarial Networks (GANs) - Eli, Calvin, Aidan, Nikhil

revbayes

seqmagick

An imagemagick-like frontend to Biopython SeqIO

singularityhub-test

testing building containers with singularity hub webhook

tripl

This one weird trick turns JSON documents into semantic graph databases!

wiki

SciWiki: Collective KnowledgeBase for Scientific Data and Use